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A structure-based virtual screening identifies a novel MDM2 antagonist in the activation of the p53 signaling and inhibition of tumor growth

Qing-yong Hu1,2, Lei Li2, Yu-huang Li2, Hai-bo Zhang2, Tao Deng2, Yang Liu2, Feng-tian Li2, Zhi-xiong Xiao2, Yang Cao2,3
1 Institute of Basic Medicine and Forensic Medicine, North Sichuan Medical College, Nanchong 637000, China
2 Center of Growth, Metabolism and Aging, Key Laboratory of Bio- Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, China
3 Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Microbiology and Metabolic Engineering Key Laboratory of Sichuan Province, Sichuan University, Chengdu 610065, China
Correspondence to: Yang Cao: cao@scu.edu.cn,
DOI: 10.1038/s41401-024-01394-6
Received: 12 June 2024
Accepted: 8 September 2024
Advance online: 9 October 2024

Abstract

p53, a tumor suppressor protein, has a vital role in the regulation of the cell cycle, apoptosis, and DNA damage repair. The degradation of p53 is predominantly controlled by the murine double minute 2 (MDM2) protein, a ubiquitin E3 ligase. The overexpression or amplification of MDM2 is commonly observed in various human cancers bearing wild-type p53 alleles, leading to the rapid degradation of the p53 protein and the attenuation of p53 tumor suppression functions. Thus, a major effort in p53-based cancer therapy has been to research MDM2 antagonists that specifically stabilize and activate p53, leading to the suppression of tumor growth. However, despite numerous efforts to develop MDM2 antagonists, to date they have failed to reach clinical use, largely because of the cytotoxicity associated with these small molecules. This study used our newly designed structure-based virtual screening approach on a commercial compound library to identify a novel compound, CGMA-Q18, which directly binds to MDM2, leading to the activation of p53, the induction of apoptosis, and cell cycle arrest in cancer cells. Notably, CGMA-Q18 significantly inhibited tumor xenograft growth in nude mice without observable toxicity. These findings highlight our useful virtual screening protocol and CGMA-Q18 as a putative MDM2 antagonist.
Keywords: RAS-mutant cancers; NPPS; HK1; glycolysis

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